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In the beginning the symptom seemed to get worse at higher engine temp. The coils were swapped and the condition existed and the miss changed to the opposite cylinders.
Does the bike run okay when cold? Is the ECU dumping lots of fuel because it thinks the bike is in the Tundra!
In order for the ECU to know what the engine temperature is there must be a thermistor. This is a resistor that accurately changes value as temperature changes.
Same thing with altitude. There is an air pressure sensor that measures atmosphere. This can change timing/A:F ratios.
I don't know where the thermistor is. Anyone?
I'm going hunting....
Several sensors I found that may be related:
Coolant temp sensor
Intake air sensor
Intake air pressure sensor..
I would think the coolant temp sensor in conjunction with the air intake sensor (and perhaps the air pressure sensor if at altitude) would relay their information to the ECU and allow the ECU, ie: if cold richen up the mixture. When at running temp, go back to its normal mixture (again depending on conditions)...
Is it possible the coolant temp sensor is relaying false info to the ECU keeping it in a "rich state" thus flooding it??
I didn't see any other sensors, for the ECU, to gather information from...