I think a lot of people are worrying about noises that are not worth worrying about.
If you google "FZ6 ticking noise" you will find hundreds of threads and videos of bikes that to me sound completely normal but to some people sound like a bike about to self destroy!
Now, regarding your noise, i find it to hard to judge an engine noise via a camera, sometimes the mic amplifies certain frequencies and make the sound worst than it really is.
But to me your bike sounds perfectly fine. Only ticking i hear i would attribute to the injectors.
Keep in mind that an engine is a metal box with hundreds of controled explosions per minutes and a lot of metal parts moving very very very fast!
It is bound to make some noise and some clicking.
IMO your bike sounds a lot like this:
[ame]http://www.youtube.com/watch?v=dshImH6wYQI[/ame]
Which is the exact same noise my bike and my friends FZ6 make, it worries a lot of people online, but i think it is the normal "Yamaha tick" and is fine, it's probably just the injectors, or the valves, or a combination of the two.
The CCT noise is pretty different, you can hear it in this video after the 2:20 mark when he releases the tension on the chain by turning the screw driver clockwise, it is clearly a different noise.
[ame]http://www.youtube.com/watch?v=QDVmZVne13U[/ame]
I don't think this sounds anything like your bike, meaning i doubt your CCT is bad, if you want to make sure there is an easy procedure to check it, it's in the manual.
Unless your bike sounds like this i would not worry about it to much!
[ame]http://www.youtube.com/watch?v=PA7Z61d-5Vg[/ame]
Now, go ride this thing...