i found some new candidates for the pipes that i think will look awesome and since i will be making all the pipes (Or ordering them from scorpion or something) it will be able to have all the piping to come down the right side of the bike. Only drawback is that they are carbon so they will have the mounting straps instead of having the mount welded to them.
eBay Motors: 2 BLUE CARBON FIBER MUFFLERS & SILENCER TITANIUM TIP (item 360028113244 end time Mar-05-08 15:26:45 PST)
That looks like a better solution, I would guess they are much lighter than the other muffler you'd found. As you stated you'd need a mounting strap. Because you'll be making a hanger perhaps the strap could be mounted more inboard? They will be loud! Is there any kind of db killer, or is the exit a straight shot?
On my Arkos the pipe goes to the right side and there is a junction that then goes to the left muffler. Charlie is correct, the majority of the gases exit on the right side. I was playing around with my db killers, removing one and then the other, and comparing the sound. It is quieter with the right side in and the left removed. You can also feel a pressure difference when you place your palm near the exit.
Another thing to consider is over scavaging. I don't know about the other system, but Arko places an hour glass shaped "cone" (yeah I know, that contradics each other) in the junction between the exit of the CAT and the exhaust pipe to keep the back pressure. The db killers contribute to this effect too. The beauty thing is, you don't have to fiddle with a PC to make it run correctly. Not sure if this is an issue with other aftermarket brands.
With the particular Arko I bought, the only one for an FZ, it is designed for street riding, not track, and they have tuned the exhaust to enhance the mid range. They have a dyno sheet that show a very nice bump and torque in the mid range. Their race specific systems are tuned for the top end and may decrease torque and hp in the mid range.
I can't post any images from this particular PC, but if you follow this link there is a really nice pdf they have on the FZ6 system, and it explains this a bit more and has more nice photos and a so-so diagram. Look under documents.
Motor Exhaust