a paint job will be cheaper than buying parts. i also agree that the sky blue isnt really that bad. i would get the bike back to DOT standards first. Get your headlight, blinkers, speedo bracket, mirrors, etc. and ride it for a while before getting it painted.
statistically if this is your first bike, its likely to be put down (not that you will) but if you tip it at low speed and scratch it up a bit, its better to do so before repainting the bike, right? it also gives you more time to decide on which color you want. you said you were colorblind, if there is any color that you can pick out fairly well, i would go with that.
† just curious but what kind of colorblind are you? red/greed, blue/orange, or do you mix up all colors?