Exactly. A metal brush will NOT be good on your o-rings at all, and will actually get the cleaner down under the o-rings, where you want the lube to stay.
If you used SimpleGreen full strength, you just ruined your chain. Simple Green is very powerful and gets many places you don't want it (esp. since you used a wire brush). I had it ruin many sealed bearings (bicycle bottom brackets & wheel bearings, motorcycle bearings) before I realized it. I use it only on non-oring chains now. Sorry for the bad news, but you really shortened its life
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